Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.14" 2022-01-18; /Data/Tools/juicer1.6_compact/scripts/juicer.sh -t 10 -D /Data/Tools/juicer1.6_compact/ -g mm10 -z /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.fasta -p /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.chromsizes.txt -s DpnII -y /Data/Tools/exoclasma/databases/mm10_Canonic/mm10_Canonic.restriction_sites.DpnII.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Benchmark_Kit30/CapM3-CapM4                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  80,801,300
 Normal Paired: 37,361,671 (46.24%)
 Chimeric Paired: 35,090,244 (43.43%)
 Chimeric Ambiguous: 7,198,815 (8.91%)
 Unmapped: 1,150,570 (1.42%)
 Ligation Motif Present: 33,938,114 (42.00%)
Alignable (Normal+Chimeric Paired): 72,451,915 (89.67%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-03-19T04:25:30,738]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 60,446,866 (74.81%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 12,005,049 (14.86%)
Library Complexity Estimate: 0
Intra-fragment Reads: 8,204,165 (10.15% / 13.57%)
Below MAPQ Threshold: 5,650,348 (6.99% / 9.35%)
Hi-C Contacts: 46,592,353 (57.66% / 77.08%)
 Ligation Motif Present: 20,120,435  (24.90% / 33.29%)
 3' Bias (Long Range): 65% - 35%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,005,299  (14.86% / 19.86%)
Intra-chromosomal: 34,587,054  (42.81% / 57.22%)
Short Range (<20Kb): 8,732,060  (10.81% / 14.45%)
Long Range (>20Kb): 25,854,967  (32.00% / 42.77%)